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...more accurate genotype phasing algorithm and a very fast and accurate genotype imputation algorithm. Version 4.1 also has several changes to the command line arguments which are desc...2760 days ago
- ...use the most common IMPUTE2 functions. We suggest that you work through these examples and try to understand what the elements of each command are doing. If you don't under...
2760 days ago
- This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's Laboratory of B...
2760 days ago
- ...mblers (e.g. Velvet). Download Minia 2.0.7 Linux 64-bits binaries (Source code) (Legacy codebase) For the impatient A typical Minia command line looks like: ./minia -in...
2719 days ago
- ...es produced after mapping reads to contigs and the resulting scaffolds file `scaffolds.fa` fasta file; -c) Contig fasta file; -m) Command line argument with no options...
2713 days ago
- ....g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line. bedtools is devel...
2641 days ago
- ...data, SSPACE is able to assess the order, distance and orientation of your contigs and combine them into scaffolds. Currently we offer this as a command-line tool in Perl. The input...
2571 days ago
CLA: Contig-Layout-Authenticator
...er widely-used scaffolding and ordering tools using both simulated and real sequence datasets. CLA is a user friendly tool that requires a single command line input to generate ordere...2571 days ago
- Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank. It uses many of the same functions as Sequin but is driven general...
2546 days ago
- ...omizable, publication quality genome maps in bitmap and scalable vector graphics formats. GView features an interactive pan-and-zoom interface, a command-line interface for incorporat...
2500 days ago
