Results for "Command lines"
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Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, an...ate genotype imputation algorithm. Version 4.1 also has several changes to the comma...2747 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use ju...ou work through these examples and try to understand what the elements of each comma...
2747 days ago
- This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's Laboratory of Bio...
2747 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop comput... (Source code) (Legacy codebase) For the impatient A typical Minia comma...
2706 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from N...lds file `scaffolds.fa` fasta file; -c) Contig fasta file; -m) Comma...
2700 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis...nalyses can be conducted by combining multiple bedtools operations on the UNIX comma...
2628 days ago
- With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair loc...
2616 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is uni...of your contigs and combine them into scaffolds. Currently we offer this as a comma...
2558 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequenci...and real sequence datasets. CLA is a user friendly tool that requires a single comma...2558 days ago
- Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank. It uses many of the same functions as Sequin but is driven...
2533 days ago
