2636 days ago
GroopM: Metagenomic binning toolset
GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sampl...2636 days ago
2629 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annota...2617 days ago
Pollux: platform independent error correction of single and mixed genomes
...In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer errors while remaining sensitive to low coverage areas of sequencing projects....2563 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...s different error profiles, rates and sequencing technologies even with default parameters. Circular genome handling to resolve coverage drops near ends of the genome...2544 days ago
Omega2: metagenome assembly pipeline
...ing time of existing overlap-layout-consensus assemblers. This indicates Omega can more efficiently assemble longer Illumina reads, and at deeper coverage, for metagenomic datasets.2511 days ago
2526 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150...s at a low cost. Even with low (advertised 1%) error rate, 100 × coverage Illumina data on average has...2390 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...data set (assembled in ~30 min), the miniasm N50 is reduced to 1.79Mb. Miniasm still needs improvements. Miniasm confirms that at least for high-coverage bacterial genomes, it is poss...2371 days ago