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The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational database. It was developed by the...2810 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly...2810 days ago
OPERA : Optimal Paired-End Read Assembler
...o OPERA (v1.0 onwards) including refinements to its basic algorithm (to reduce local errors, improve effic...-LG. In our benchmarks, it has significantly improved corrected N50 and reduced the number of scaffolding...2808 days ago
- ...structure. It is inspired by the string graph assembler (Simpson and Durbin, 2010 and 2012) and has a similar workflow.As a typical de novo assembler, fermi tends to produce contigs with slightly ...
2808 days ago
CGView - Circular Genome Viewer
...ge used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps...rcular or linear layouts. For examples of some of the images GView can produce, see the Image Gallery. GVi...2798 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To...
2787 days ago
- ...parative purposes. The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers, and explore synten...
2787 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...le loci can be spread throughout the genome and affect individual fitness. Multi-type selection: Individual fitness can be jointly.... The dispersal matrix describing the movement of individuals among sub-populations can...2785 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different resolution that variants are reported from traditional cytogen...
2785 days ago
- ...urrent breakpoint events. This easy-to-use algorithm, ‘GeneBreak’, is implemented in R (www.cran.r-project.org) and is available from Bioconductor (www.bioconductor.org/packages/release/bioc...
2166 days ago
