Results for "DU"

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  • PHYMMBL

    ...asier, by making the sequencing process faster, and more difficult, by producing shorter read lengths than...s distribution which combines analysis from both Phymm and BLAST, produces even higher accuracy.

    2777 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    ...sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to...

    2768 days ago

  • Ribbon !!

    ...s in the sample. This way Ribbon shows patterns in alignments of many reads across multiple chromosomes, while allowing detailed inspection of individual reads (Supplementary Note 1...

    2766 days ago

  • Shinyheatmap

    ...various next-generation sequencing (-omics) fields are known for their production of large datasets. Visua...n of extremely large datasets that cannot typically be computed in-memory due to size restrictions. Conclu...

    2766 days ago

  • GenomeScope: open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads

    ...ted and 16 real datasets with a wide range in genome sizes, heterozygosity levels, and error rates. Availability and Implementation: http://qb.cshl.edu/genomescope/, https://github....

    2358 days ago

  • Beagle

    Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Beagle v...

    2760 days ago

  • PLINK2

    This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK'...

    2760 days ago

  • LINKS

    LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-qualit...

    2752 days ago

  • R Graphs !!

    The blog is a collection of script examples with example data and output plots. R produce excellent quality graphs for data analysis, science and business presentation, publications and other purposes. Self-help codes and examples are provided. Enjoy nice graphs !!

    2752 days ago

  • Comparative genomics educational material and papers bookmarks

    Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and...

    2746 days ago