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...in IUPAC wildcard characters. Also, paired-end reads and even colorspace data is supported. If you want, you can also just demultiplex your input data, without removing adapter seq...2714 days ago
- ...es as input. If no input file is specified, fqtools will attempt to read data from stdin. In this case, it is advisabe to specify the format of the data provided. For subcommands tha...
2720 days ago
- ...is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well as new complementary tools tailored for ancient DNA data within a single integrated so...
2718 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also useful for the same: http://learnin...2716 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from NGS data (reads and contigs). The tool is written in Python 2.7. It...
2715 days ago
- ...l gene organization, thus greatly facilitating the interpretation of the data. Availability: Genomicu...ble for online use at http://www.dyogen.ens.fr/genomicus while data can be downloaded at ftp...
2712 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old p...2709 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of...the reliability of each aligned column. Use sequence quality data properly. Compare DNA t...
2709 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...locates the 3' end of every gene in the experimentally verified Ecogene data set (except those containing...n initiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly)....2699 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies su...workflows for new technologies and protocols. Process feature barcoding data such as CITE-seq, REAP-seq, M...1141 days ago
