Results for "De Bruijn graph"
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GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Seq...ough reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an optimal&n...2695 days ago
- ...reads. In contrast, real genomes often have long repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-based assembly approach was o...
2694 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW...that use simple heuristics to select alignments, YAHA uses a directed acyclic graph to find the optimal set of al...
2663 days ago
- Our basic strategy in building homology maps is to use exo...ents being performed in protein space. Construct a graph with each vertex correspondin...e significant alignments. Identify cliques in this graph. These cliques are potential...
2646 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...yotic or vertebrate species, on a usual computing server, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph (DBG) representing the short...2583 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on sma...2548 days ago
- The process of finishing a genome and moving it...new scripts for working with multiple maps, contig graphs and scaffolds. Augmen...shotgun assembly are typically linked together in a graph structure that can serve to g...
2542 days ago
- Circular plots are useful to represent complicated informations. They...sp;makes the circos functions available in R! It implements low-level graphic functions for adding common graphics in a circular layout. This...
2513 days ago
Omega2: metagenome assembly pipeline
...using a prefix/suffix hash table. The overlap graph of reads was simplified by rem...on minimum cost flow analysis of the overlap graph and then merged to contigs an...pair information. In comparison with three de Bruijn graph assemblers (SOAPdenovo, IDBA-...2492 days ago
- DISCO is a multi threaded and multiprocess distributed memory overlap-layout-consensu...access. The assembly and scaffolding were performed using an iterative overlap graph approach.
2492 days ago
