Results for "Deep Sequencing"
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Redundans pipeline assists an assembly of heterozy...sembled contigs, paired-end and/or mate pairs sequencing libraries and returns&nb...-to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 o...2816 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en...OPERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacBio or Oxfor...2808 days ago
- These tutorials are written for hundreds...with large volume of next-generation sequencing (NGS) data. NGS technologies...ght a dramatic shift in the world of sequencing. Merely five years back, geno...us government agencies. The tasks of sequencing and assembly were handled by...
2812 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We...ent of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE hav...2810 days ago
- Development of cancer is driven by somatic alterations, including numerical and str...by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ col...
2167 days ago
- ...erall short RNA) expression using short-read deep sequencing data. In its present im...nalysis of reads generated with the Illumina sequencing platform. MIRO allows to prep...with software such as genome browsers and miRDeep.
2783 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharact...ical diversity present in a sample. The newest sequencing technologies have simultaneously made metagenomics easier, by making the sequencing process faster, and more diff...
2777 days ago
- Visualization has played an extremely important role in...been found in the transcriptome previously, genome sequencing did not identify a direct chr...mosomal fusion between these two genes. After SMRT sequencing, Ribbon shows that there are...
2766 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for...
2766 days ago
- ART is a set of simulation tools to g...nerate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real seque...mmarized from large recalibrated sequencing data. ART can also simulate r...major commercial next-generation sequencing platforms: Illumina's Solexa,...
2753 days ago
