Results for "Distance"
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...redicts the exact centromere locations. For seven yeasts with point centromeres, Centurion predicts most of the centromeres at an average of 5~kb distance from their known locations. F...3010 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compu...
2919 days ago
- ...matches to calculate a lineage probability index (LPI) score for each genome protein. LPI scores are inversely proportional to the phylogenetic distance between database match sequen...
2879 days ago
- ...genomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct distance from each other in the assemb...
2787 days ago
FSA: Fast Statistical Alignment
...is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruc...2650 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...Gchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on...2638 days ago
- ...possibility to manually control the scaffolding process. By using the distance information of paired-end and/or matepair data, SSPACE is able to assess the order, distance and orientation of your conti...
2562 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which combines contig order, distance and orientation in a single o...2544 days ago
- PATRISTICv1.0 is a java program that calculates patristic distances from large trees in a range of file formats and allows graphical and statistical interpretation of distance matrices calculated by other programs.
2467 days ago
- RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and com...
2467 days ago
