BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...ith e.coli and salmonella, you could do this:bbsplit.sh in=reads.fq ref=ecoli.fa,salmonella.fa basename=out_%.fq outu=clean.fq int=tThis will produce 3 output files:out_ecoli.fq (ecoli reads)out_salm...2328 days ago
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