2861 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for ac...tting normally complete the process. EDirect also provides a.... Queries can move seamlessly between EDirect commands and UNIX utilities o...cannot be accomplished entirely within Entrez.2747 days ago
2745 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-b...tiple alignment. This randomized inference can be over ten times faster than a direct approach with little loss of...2637 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and arc...nits such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, inserti...2538 days ago
2533 days ago
2483 days ago
Genome assembly stats plotting
A de novo genome assembly can be summarised b y...applied to a single or multiple assemblies to allow direct comparison of alternate assemblies. Tabular presentation allows direct comparison of exact values be...2250 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequen...reads ./minimap2 -ax splice -k14 -uf ref.fa reads.fa > aln.sam # Nanopore Direct RNA-seq ./minimap2 -cx asm5...2138 days ago
1958 days ago