Results for "Estimate"
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...lly any genome assembler and any NGS read mapper that supports SAM format. Other features include support for multiple libraries and an option to estimate insert size distributions fro...2854 days ago
- ...embled, or to compare the quality of different assemblies. For comparing multiple assemblies of the same data-sets, VALET also reports an overall estimate of the likelihood a particula...
2783 days ago
- Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content...
2347 days ago
- The objective of this activity is to help you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of&n...
2705 days ago
- ...d mode) Scaffolding In reference-based mode, pyScaf uses synteny to the genome of closely related species in order to order contigs and estimate distances between adjacent co...
2695 days ago
FSA: Fast Statistical Alignment
...like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multiple align...tructing better alignments: FSA uses machine-learning techniques to estimate gap and substitution paramete...2646 days ago
WGS Celera Assembler version 8.3rc2
...dumpPBRLayoutStore-rwxrwxr-x 1 urbe urbe 1,3M Apr 10 11:41 dumpSingletons-rwxrwxr-x 1 urbe urbe 171K Apr 10 11:41 erate-estimate-rwxrwxr-x 1 urbe urbe 221K Apr 10 11:40 estimate-mer-threshold-rwxrwxr-x 1 urb...2583 days ago
- ...It maps a query sequence against a reference region if and only if its estimated alignment identity is above...d threshold. It does not compute the alignments explicitly, but rather estimates a k-mer based Jacc...
2337 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...The join between two contigs A and B is considered correct if: Their relative orientation is correct Their relative order is correct The gap estimate is similar to the true distan...2238 days ago
- ...es sequenced by the same lab for a particular study) while allowing read multi-mappings.Several mapping tools implemented in CroCo can be used to estimate expression level (default is...
1946 days ago
