Results for "Exploring Gene Networks"
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Gene finding in eukaryotic genomes is notoriously difficult to automate. The task i...-art performance across a wide range of species. GeneMark-ET is a gene prediction tool that incorpor...the prediction step. Complementary strengths of GeneMark...1964 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons betwee...graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene pre...2787 days ago
- Development of cancer is driven by somatic alterations, including numeri...iated chromosomal breaks and identify genes that appear non-randomly aff...oss (large) series of tumor samples. ‘GeneBreak’ is developed to systema...annotation approach for breakpoint-to-gene map...
2167 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression usi...lly adapted for the analysis of reads generated with the Illumina sequen...ifferent mappers, create differential gene (mi...
2783 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, va...2768 days ago
- Visualization has played an extremely important role in the current genomic revolution to inspect...dual reads (Supplementary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CY...
2766 days ago
- HybPiper was designed for targeted sequence capture, in which DNA s...ncing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...Seq), and assigns them to target genes using BLASTx or BWA. The rea...d sequence reads). When HybPiper generate...
2752 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number...represent and compare unlimited numbers of genomes in a broad phylogenetic...
2710 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generati...
2704 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...bial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...y locates the 3' end of every gene in the experimentally verifie...2697 days ago
