...lit spots into individual reads
Full Spot Filters Applied to t...emove adapter sequences from reads
Common Filters Applied t...matepair distance on the same reference
Filters for individual reads Ap...
...pass quality thresholds and Illumina-specific filters.
CollectQualityYieldMe...ns reads to the microbe reference
PathSeqFilterSpark...erVcf (Picard) Hard filters a VCF.
VariantFiltration...