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FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2617 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath...wing commands can generate 20 threads to run FinisherSC. python finisherSC.py -par 2...tigs consists of special characters/formats, FinisherSC/MUMmer may not parse them cor...2079 days ago
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Genome Assembly Tools and Software - PART1 !!
...gene sets, and transcriptomes in terms of expected gene content. FinisherSC 2.0 – A Repeat-aware tool for upgrading de-novo Assembly using Long Reads FinisherSC is a repeat-aware and scalabl...2679 days ago
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FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, Long, FinisherSC
2617 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python finisherSC.py -par 20 destinedFolder mummerPath S...Tags: FinisherSC, repeat-aware, tool, upgrading, de novo, assembly, long, reads
2079 days ago
