Latest paper on comparison of mapping tools
...://online.liebertpub.com/doi/pdf/10.1089/cmb.2012.0022 http://bioinformatics.oxfordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://research-pub.gene.com...3908 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ming, alignment, quantification, quality analysis, statistics, and visualization Includes ten fully customizable aligners (Bowtie, Bowtie 2, BWA, GSNAP, Isaac 2, SHRiMP 2, STAR, TMA...2920 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
...wa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw ../index/bwa/hs37m.fa r12.fq > r12.bwasw.sam gsnap -A sam -d hs37m r1.fq r2.fq > r12.gsnap.sam novoalign -r Random...2194 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/software/pmap/pmap.html Other similiar papers: http://online.liebertpub.com/doi/pdf/10.1089/cm...Tags: Sequencing, short reads mapping, SNP, GSNAP, BWA, Bowtie, BWA, mrsFAST
3908 days ago