Results for "Gene Expression."
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BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons betwe...graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene presen...2786 days ago
- Development of cancer is driven by somatic alterations, including numeri...iated chromosomal breaks and identify genes that appear non-randomly aff...oss (large) series of tumor samples. ‘GeneBreak’ is developed to systema...annotation approach for breakpoint-to-gene mappin...
2166 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression usi...lly adapted for the analysis of reads generated with the Illumina sequen...ifferent mappers, create differential gene (miRNA...
2781 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, varia...2767 days ago
- Visualization has played an extremely important role in the current genomic revolution to inspect...dual reads (Supplementary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH1...
2765 days ago
- HybPiper was designed for targeted sequence capture, in which DNA...cing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...eq), and assigns them to target genes using BLASTx or BWA. The rea...sequence reads). When HybPiper generates s...
2751 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number...represent and compare unlimited numbers of genomes in a broad phylogenetic vie...
2709 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating...
2703 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...bial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...y locates the 3' end of every gene in the experimentally verifie...2696 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq a...1138 days ago
