Results for "Gene expression"
Bookmarks
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons betwe...graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene prese...2771 days ago
- Development of cancer is driven by somatic alterations, including numeri...iated chromosomal breaks and identify genes that appear non-randomly aff...oss (large) series of tumor samples. ‘GeneBreak’ is developed to systema...annotation approach for breakpoint-to-gene mappi...
2150 days ago
- ...tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep s...cially adapted for the analysis of reads generated with the Illumina sequen...r different mappers, create differential gene (miRNA) expression profiles and cluster reads us...
2766 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...ez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal w...2752 days ago
- ...genomic revolution to inspect and understand variants, expression patterns, evolutionary...ds (Supplementary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH1 and EIF3H. While it has been...
2750 days ago
- HybPiper was designed for targeted sequence capture, in which DNA...cing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...eq), and assigns them to target genes using BLASTx or BWA. The rea...sequence reads). When HybPiper generates...
2736 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number...represent and compare unlimited numbers of genomes in a broad phylogenetic vi...
2693 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating...
2688 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...bial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...y locates the 3' end of every gene in the experimentally verifie...2681 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq...1123 days ago
