Results for "Genome"
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...des a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide significance threshold i...2758 days ago
- ...ry. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented...he SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. Var...
2752 days ago
- ...INKS is a genomics application for scaffolding genome assemblies with long reads, s...It can be used to scaffold high-quality draft genome assemblies with any long sequ...es (eg. ONT reads, PacBio reads, another draft genomes, etc) Paper at https:/...
2751 days ago
Maq: Mapping and Assembly with Quality
...e steps to try Maq. All you need is a reference sequence file in the FASTA format. Prepare a reference sequence (ref.fasta). Better a bacterial genome. Download maq, maq-data and...2733 days ago
- ...now producing multiple times the genome size in total reads from a si...ifferences between the individual genome studied in the experiment and...is disregarded and the reference genome is used. Results. We provide...is closer to the actual sequenced genome and has a full coverage. In t...
2730 days ago
- ...is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad In... Satsuma, a highly parallelized program for high-sensitivity, genome-wide synteny; Papaya,&nb...
2727 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will a...gs, using a given kmer size. https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA
2726 days ago
- ...ll WES experiments can be re-analysed using our method with the beneficial effect to identify novelCNVs in extra-exonic regions by having the full-genome CN profile.
2725 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2725 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic...
2724 days ago
