Results for "Genome Assembly"
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Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms ena...r of duplicated genes in the yeast genome. The remaining ambiguities in.... We used this test to revisit the genome of S. cerevisiae, reducing th...onal motif discovery. Based on the genome-w...2744 days ago
- ...dans pipeline assists an assembly of heterozygous genomes.Program takes as input ...ns scaffolded homozygous genome assembly, that should be less f...the gaps resulting from genome assembly or scaffolding more deta...
2813 days ago
OPERA : Optimal Paired-End Read Assembler
...Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from...tigs/scaffolds assembled in a genome assembly project, in a process known a...gorithms is available at Genome Biology. We look forward to get...2805 days ago
- ...nbsp;short sequence reads from a mammal-sized genome. In addition to the role of a...r, the major weakness of fermi is the high misassembly rate. Although fermi pro...ipt. It generates a Makefile. The actual assembly is done by invoking make. Pre...
2805 days ago
- ...world of sequencing. Merely five years back, genome sequencing of higher eukaryot...used to be very expensive endeavor. To get a genome of interest sequenced, hundre...ernment agencies. The tasks of sequencing and assembly were handled by dedicated seq...
2809 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational...er Institute (JCVI) and the Institute for Genome Sciences (IGS) at the Univers...esearch projects that involve comparative genome a...
2807 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...of the very latest large-scale genome assembly algorithms. We have organiz...oduce a realistic assessment of genome assembly software in a rapidly changin...w been published in the journal Genome Research: GAGE: A critical...uation of genome assemblies and assembly algorithms. http://genome.cs...2807 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e-write of CGView, a circular genome viewer written by Paul Stotha...2795 days ago
- VALET is a pipeline for performing ...that should hold true for a correct assembly (e.g., mate-pairs are aligned...rect distance from each other in the assembly, the depth of coverage is fai...imate of the likelihood a particular assembly is correct. Home Page:...
2792 days ago
BLAST Ring Image Generator (BRIG)
...t can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is av...ntig boundaries and read coverage can be displayed for draft genomes; customized graphs and annotat...2784 days ago
