Results for "Genome STRiP"
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Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSB...EBRs (shared by pigs and cattle) were detected using the pig and human genom...2747 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms ena...r of duplicated genes in the yeast genome. The remaining ambiguities in.... We used this test to revisit the genome of S. cerevisiae, reducing th...onal motif discovery. Based on the genom...2747 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input asse...eturns scaffolded homozygous genome assembly, that should be ...lose the gaps resulting from genome assembly or scaffolding ...e laptop for small-to-medium size genom...
2817 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (...iate contigs/scaffolds assembled in a genome assembly project, in a proces...t are important for scaffolding large genomes (multi-library support, bett...s and algorithms is available at Genom...2809 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genom...
2809 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large...in the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive endeavor. To get a genom...
2813 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational...ter Institute (JCVI) and the Institute for Genome Sciences (IGS) at the Univers...research projects that involve comparative genom...
2811 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "ba...an attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genom...2811 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e-write of CGView, a circular genome viewer written by Paul Stotha...2799 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genom...2788 days ago
