AVID: A Global Alignment Program
...fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long....nging from the comparison of assemblies to alignment of large syntenic genomic regions and whole genome huma...2547 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...om shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscri...2546 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...Overlapping of reads for de novo assembly. Transcriptome mapping through internal construction of a transcriptome from a given genomic reference and a GTF file.&nbs...2533 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...DOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with r...ting the efficient and accurate analysis and management of large-scale genomic data. The overview section o...2527 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...ntal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic...2517 days ago
2514 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing tech...2482 days ago
2372 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in se...ary time. Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologou...2368 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...analysis, in combination with manual curation, may thus constitute a useful complement to standard bioinformatics analyses prior to submission of genomic data to public repositories....2363 days ago