Results for "Graph Mining"
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GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data se...2940 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. pro...omatin interaction maps enables effective data visualization, integration, and mining. Currently, there is no softw...
2880 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mamma...index (FMD-index) as the key data structure. It is inspired by the string graph&...
2807 days ago
- Seven Bridges is the biomedical data analysis company accelerating breakthroughs in genomics research for cancer,...uild self-improving systems to analyze millions of genomes, including the Graph...
2758 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia pro...
2717 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of...
2717 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal...ough reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph...2706 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have b...d they are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-...
2705 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best al...that use simple heuristics to select alignments, YAHA uses a directed acyclic graph...
2674 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in mu...ents being performed in protein space. Construct a graph with each vertex correspondin...e significant alignments. Identify cliques in this graph....
2657 days ago
