Results for "Graph Theory"
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GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal...ough reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph...2704 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have b...d they are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-...
2703 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best al...that use simple heuristics to select alignments, YAHA uses a directed acyclic graph...
2672 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in mu...ents being performed in protein space. Construct a graph with each vertex correspondin...e significant alignments. Identify cliques in this graph....
2655 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a...tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example,&n...
2637 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with hi...r, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph...2592 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG o...2557 days ago
- The process of finishing a genome and moving it from a draft stage...new scripts for working with multiple maps, contig graphs and scaffolds. Augmen...shotgun assembly are typically linked together in a graph...
2552 days ago
- Circular plots are useful to represent complicated informations. They are used in 2 specific cases...sp;makes the circos functions available in R! It implements low-level graphic functions for adding common graphi...
2522 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transi...minimum cost flow analysis of the overlap graph and then merged to contigs an...mation. In comparison with three de Bruijn graph...2501 days ago
