Results for "Grep"
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Linux command line exercises for NGS data processing
...wk in the exercises as it is a language in itself and is used more often to manipulate NGS data as compared to the other command line tools such as grep, sed, perl etc. Furthermore,...2877 days ago
Many-Core Engine (MCE) for Perl example
...model. MCE::Flow is similar to MCE::Loop, but allows for multiple code blocks to run in parallel with a slight change to syntax. MCE::Grep Provides a parallel grep implementation similar to the...2654 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...t; reads.gfa Convert GFA to FASTA: awk '/^S/{print ">"$2"\n"$3}' reads.gfa | fold > reads.fa And then count how many contigs: grep ">" reads.fa | wc -l &n...2354 days ago
