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EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.2671 days ago
FSA: Fast Statistical Alignment
...comparisons, developed by Ariel Schwartz in "Posterior Decoding Methods for Optimization and Control of Multiple Alignments." FSA brings the high accuracies previously availab...2661 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2640 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...oi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that ali...RS reads or long 454 reads in fasta format) to high-confidence draft assembles. P...entification approaches designed to exploit the high mappability of long reads (i....2640 days ago
- Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three...P and short indel sequence variantsHTSlibA C library for reading/writing high-throughput sequencing data S...
2624 days ago
- ...is website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic high-throughput sequencing data wi...
2606 days ago
- High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which...
2603 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid stra...2598 days ago
- ...e to bundle a FASTA sequence and its quality data, but has recently become the de facto standard for storing the output of high-throughput sequencing instrum...
2575 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial sequen...
2573 days ago
