Results for "IT"
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...i.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe with your web browser. #If th.../ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it should put BLAST under C:\Pro...1153 days ago
- ...; #concatenate two strings my $modifiedDNA = $DNA.$polyA; #calculate the length of $modifiedDNA and #print out the value of the variable and its length my $DNAlength = leng...
2923 days ago
Count the frequency of base G in a given DNA sequence
...usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos...y $DNAlength = length($DNA); #for each letter in the sequence check if it is the base G #if 'yes' incr...2923 days ago
- ...A sequence is $RNA\n"; #find the reverse complement of $DNA using substitution operator #first - rever...rcDNA =~ s/C/G/g; print "Reverse complement of $DNA is $rcDNA\n"; #did it work? #find the reverse co...
2923 days ago
Read lines from input file – print lines that match a regular expression
...nings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line...?A{3,10}$/) { print "$line\n"; } } exit(); __DATA__ ATGCCCAA ATG...2923 days ago
Parse a genbank file using regular expressions
.../(LOCUS\s*)(\w*)(.*)/) { print "Locus: $2\n"; } elsif (/(VERSION.*GI:)(\d*)/) { print "GI: $2\n"; } elsif (/(DEFINITION\s*)(.*)(\.)/) { pri...2923 days ago
- ...r full path) $outputDir = "OutDir"; # Path to pattern file $patFile = "/home/anjana/patterns/polyA.pat"; # Go to sequence directory and open it (i.e, read contents) chdir($...
2922 days ago
Perl script to Mutate a DNA Sequence
...mutation results. # While executing this script it asks for the file name of the...e directory of this script, enter the file name with its full path. # Example:...utant); print "$mutant\n"; print WRITE "$mutant\n"; } sub mut...2922 days ago
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...cal/bin/perl -w # While executing this script it asks for the file name of the...f this script, enter the name of the file along with the path. In windows: c:...le is:\n $DNA \n"; $DNA =~ s/\s//g; @DNA = split( '', $DNA ); $count_of_A = 0...2922 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...d( $param{help} ) ) { print_usage(); exit(0); } if ( !( defined(...{returnType} ) ) ) { print_usage(); exit(1); } $param{returnType}..."EFetch results could not be parsed. Resubmitting query.\n" );...2922 days ago
