Results for "LAMSA"
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LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split...ds (over thousands of base-pairs). LAMSA takes takes the advantage of...designed two-step strategy. That is, LAMSA initially splits the read int...co-linear variants. We benchmarked LAMSA with simulated and real datas...2188 days ago
Bio-Scripts
Long reads mapper bash script !
...3/bin/bwa ngmlrLoc=/home/urbe/Tools/ngmlr/bin/ngmlr-0.2.3/ngmlr lamsaLoc=/home/urbe/Tools/LAMSA/lamsa #Parameters accepted...a $longReads -t $thread > $fileName.out.sam elif [ $toolName == "lamsa" ]; then echo "Mapping wi...2128 days ago
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LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long reads (over thousands of base-pairs). LAMSA takes takes the advantage of the rareness of SVs to implement a specifi...Tags: LAMSA, fast, split, read, alignment, long, approximate, matches
2188 days ago
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Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len [INT] Length of s...2128 days ago
