CLA: Contig-Layout-Authenticator
...he consensus draft. The CLA pipeline was designed and trained extensively on various bacterial genome datasets for the ordering and scaffolding of large repetitive contigs. The tool...2570 days ago
CABOG: Celera Assembler with Best Overlap Graph
...DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as large genomes such as mammalian. CA...2560 days ago
2554 days ago
AVID: A Global Alignment Program
...to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabas...f the method, ranging from the comparison of assemblies to alignment of large syntenic genomic regions and...2551 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data. The over...2532 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 2009 to f...2511 days ago
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QuorUM: An Error Corrector for Illumina Reads
...ta on average has an error in some read at every base in the genome. These errors make handling the data more complicated because they result in a large number of low-count erroneous...2383 days ago