Results for "Lateral gene transfer PLOS"
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BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between...d graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene...2774 days ago
- Development of cancer is driven by somatic alterations, including numerical...ssociated chromosomal breaks and identify genes that appear non-randomly aff...across (large) series of tumor samples. ‘GeneBrea...red annotation approach for breakpoint-to-gene...
2154 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression usi...ecially adapted for the analysis of reads generate...ur different mappers, create differential gene...
2769 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene...2755 days ago
- Visualization has played an extremely important role in the current genomic revolution to i...eads (Supplementary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the gene...
2753 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...MiSeq), and assigns them to target genes us...-end sequence reads). When HybPiper gene...
2739 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by t...that can represent and compare unlimited numbers of genomes in a broad phylogene...
2697 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homo...somal regions and subsequently align these regions using genes as anchors. This is the toolset for gene...
2691 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a mi...obial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...ly locates the 3' end of every gene in...is freely available under the Gene...2684 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-s...1126 days ago
