Results for "Long"
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...tes. Instead, structural variations captured by long reads or assembled contigs of...ne visualization tool that displays alignments along both reference and query sequ...sequencing, Ribbon shows that there are indeed long reads that span from one gene...2752 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced b...It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, Pac...
2738 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...ite efforts to design tools able to assemble, de novo, an organism sequenced with short reads, the results are still far from those achievable with long reads. In this paper, we prop...2693 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number...2693 days ago
- ...mprove contiguity of genome assemblies based on long molecule sequences, often wit...blies made with illumina short reads and PacBio long reads to improve contiguities...onsidered to cover genomic regions which PacBio long reads cannot. Although we hav...
2693 days ago
- ...yScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synte...
2693 days ago
- ...l sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes often have long repetitive regions, and they...
2692 days ago
- ...rst stage. The output of Cgaln is 'glocal' in the sense that rearrangements are taken into consideration while each alignable region is extended as long as possible. Thus, Cgaln is n...
2628 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing...2589 days ago
FSA: Fast Statistical Alignment
...large-scale problems such as aligning thousands of sequences or megabase-long sequences. FSA introduces sev...irect approach with little loss of accuracy. FSA can quickly align very long sequences using the "anchor a...2644 days ago
