2634 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...iant calling and allele dosage estimation. Results for simulated and real datasets are discussed and provide evidence that ConPADE performs well as long as enough sequencing coverage...2626 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2623 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...e.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to...tion approaches designed to exploit the high mappability of long reads (i.e., greater than 10,...2623 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be...2607 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high err...rt reads, and seeks a corrective sequence for each erroneous region of a long read by traversing chosen pat...2581 days ago
2572 days ago
CABOG: Celera Assembler with Best Overlap Graph
...all sequencing machines, namely, that they read out very few DNA letters at a time. These programs reconstruct genomes that are billions of letters long from the hundreds of letters...2546 days ago
2539 days ago
AVID: A Global Alignment Program
...od called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We present numerous applicat...2537 days ago