2634 days ago
2634 days ago
YASRA: Reference based assembler
...Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes ma...2621 days ago
Metagenomics assembly workshop !!
...Quality Control Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning Ma...2573 days ago
2559 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...using the same data sets as used by the original assembler. iCORN, that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly...2549 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...uce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp....2543 days ago
2541 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ll/ncomms11307.htmlFeatures Mapping position agnostic to alignmen...; E-value. Meaningful mapping quality. Va...ovo assembly. Transcriptome mapping through internal construction...2523 days ago
QuorUM: An Error Corrector for Illumina Reads
...ads. However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequent use of the data (e.g. for mapping or assembly) easier. Here we...2369 days ago