Results for "MashMap"
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MashMap is a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s). It maps a query sequence against a reference region i...2334 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...lying procedure follows a similar workflow as described by Goris et al. 2007. However, it avoids expensive sequence alignments and uses Mashmap as its MinHash based seq...2121 days ago
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- MashMap is a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s). It maps a query sequence against a reference region if and only if its estimated alignment identity is above a specified threshold. It does not compute the alignments explicitly, but...
Tags: MashMap, fast, approximate, software, mapping, long, reads, PacBio, ONT, assembly, reference, genome(s)
2334 days ago
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- ➜ mashmap-Linux64-v2.0 git:(master) ✗ ./mashmap -h-----------------Mashmap is an approximate long read or contig m...ilarity-----------------Example usage:$ mashmap -r ref.fa -q seq.fq [OPTIONS]...t;value> output file name [default : mashmap.out] -k <value>, --kme...
2121 days ago
