Results for "Number"
Bookmarks
CovCal: Coverage / Read Count Calculator
...Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of reads. Source code on GitH...2180 days ago
- ...artly compensated by simulating INDEL polymorphisms.Wgsim outputs the simulated polymorphisms, and writes the true read coordinates as well as the number of polymorphisms and sequenci...
2887 days ago
- ..., or conversely, to find what the SAM Flag value would be for a given combination of properties. To decode a given SAM flag value, just enter the number in the field below. The encod...
2881 days ago
- ...cifies the average insert size of the mate-pair library preprocess allows the detection and correction of chimerae, the estimation of contigs copy number and produces valuable outputs...
2867 days ago
- .... It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and...
2833 days ago
Comparative genomics educational material and papers bookmarks
...ing porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The number of porcine EBRs is comparable to the number of bovine-lineage-specific EB...2748 days ago
Method in Comparative genomics !!
...genes and intergenic regions across the four species despite the large number of duplicated genes in the ye...gly conserved motif cores, which we extended and collapsed into a small number of candidate regulatory motif...2748 days ago
OPERA : Optimal Paired-End Read Assembler
...ore encourage you to download and use our latest version: OPERA-LG. In our benchmarks, it has significantly improved corrected N50 and reduced the number of scaffolding errors. Furthe...2809 days ago
- ...ore. Sybil has been used at TIGR/JCVI, IGS, NYU, New York Medical College, Novartis Vaccines and University of Maryland: College Park to support a number of research projects that inv...
2811 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g.,...
2796 days ago
