Next generation sequencing in R or bioconductor environment
...he BayesPeak package as well as the incorporation of read coverage information obtained by the chipseq package. Documentation [ Publication ] PICS The PICS package applies probabilistic...3621 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given b...2868 days ago
2907 days ago
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Se...Tags: ChIP-Seq, strand ngs, peak calling, PICS, MACS, broad peaks, narrow peaks
3194 days ago