Tags: Raku, Programming, Language, Perl6, Perl
1554 days ago
Tags: Machine, learning, Perl
1534 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @A...Tags: fasta, multiple fasta, ncbi, entrez, perl
3905 days ago
Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The latest version is 0.79, read the release note: Release 0.79. Copy & Paste this line into your terminal: \curl -L https://install.perlbrew.pl | bash Or, if your system does not have curl but something else: # Lin...Tags: admin-free, perl, installation, management, tool
2484 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information. Assemble RepeatMasker hits into complete TE copies, including LTR-retrotransposon Retrieve correspond...Tags: perl, tool, conveniently, parse, RepeatMasker, output, files
2157 days ago
TwinBLAST: When Two Is Better than One
TwinBLAST is a web-based tool for viewing 2 BLAST reports simultaneouslyside-by-side. It uses ExtJS (www.sencha.com/products/extjs/) to provide 2independently scrollable panels. BioPerl (www.bioperl.org) is used to indexraw BLAST reports and Bio::Graphics is used to draw pictograms of the BLASThi...Tags: TwinBLAST, blast, perl, HGT, LGT
1697 days ago