3389 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
.... In addition, you can include them in R Markdown or in R Shiny applications. Some of the prominent features of the package are: visualizing polyploidy simultaneously on the same pl...1703 days ago
1216 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given contig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencin...Tags: Bioinformatics, Analysis, Assembly, Genome, ConPADE, Polyploidy
2628 days ago