Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT...e open source or freely available for non-commercial use. See the individual project site...2622 days ago
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CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observ...accurate in the foreseeable future. Our methods were developed as part of a project to r...2558 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or prote...d to help decide between alternative sequencing methods for a sequence-based project, e.g...2552 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/16...more.GraphMap is also used as an overlapper in a new de novo genome assembly project call...2538 days ago
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GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput...unding by the Medical Research Council and the EU Framework 7 Project "Eur...2510 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the c...xam, class presentations, and a significant class project. There are no formal course p...rogramming to complete the assignments and course project.2363 days ago