2687 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...uivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data fr...b-seq. Obtain QC reports from single-cell RNA-seq data The kallisto...nd efficient pre-processing of single-cell RNA-seq, Nature Biotechnology (20...1123 days ago
FSA: Fast Statistical Alignment
...m which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as dis...racies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such...2642 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...ewswire/ Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Iden...encing (NGS). The first theme is large-scale RNA-Seq data analysis. Current cr...que Molecular Identifiers, or UMIs, for DNA-, RNA- and small-RNA-Seq. UMI suppo...2383 days ago
Pacbio Long Reads Compatible Software and Tools
...bsp;Email us. Software categories: De novo assembly Structural Variations Detection Reference-based alignment Consensus and variant calling RNA analysis Epigenetic base mod...2605 days ago
2557 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...m to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequence...community diversity. Grinder may also be used to help decide between alternative sequencing methods for a...2535 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...or de novo assembly. Transcriptome mapping through internal construction of a transcript...uired.Currently, development of a new spliced-alignment mode for mapping RNA-seq reads is under way.Descri...2521 days ago
2503 days ago
GeneProf: analysis of high-throughput sequencing experiment
...ced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Gener...nalysis:Analysis of ChIP-seq and RNA-seq data in one place, p...new..') and data from GeneProf may be used externally (cp. Section 'Web API...2493 days ago