splitbam: splits a BAM by chromosomes
...-R (indexed reference file) REQUIRED. -u (unmapped chromosome name): default:Unmapped -e | --empty : generate EMPTY bams for chromosome having no read mapped -m | --mock : if opti...2617 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can d...om the genome being sequenced. Mapping reads to reference genomes makes u...quality for 454 and Illumina sequence reads. YASRA uses LASTZ (http://b...2616 days ago
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LoRDEC: a hybrid error correction program for long, PacBio reads
...specially intended for PacBio reads. It uses a hybrid strategy,...ning that it uses two sets of reads: the reference read set, who.... Usually, errors in PacBio reads include many insertions and...(DBG) representing the short reads, and seeks a corrective sequ...2576 days ago
Metagenomics assembly workshop !!
...FastQC Quality Control Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binni...2568 days ago
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CABOG: Celera Assembler with Best Overlap Graph
...the fundamental limitation of all sequencing machines, namely, that they read out very few DNA letters at a...nomes that are billions of letters long from the hundreds of letters per read that modern sequencers provid...2541 days ago
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