Results for "Reference"
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...rs on BRIG’s SourceForge page:http://sourceforge.net/tracker/?group_id=328245. Features: Images show similarity between a central reference sequence and other sequences...2635 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates....fasta (bam|sam|stdin) Options -h help; This screen. -R (indexed reference file) REQUIRED. -u (unmapped...2623 days ago
YASRA: Reference based assembler
...comparative assembly of short reads using a reference genome, which can differ subs...the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (H...r version) for aligning the sequences to the reference genome. Please install LASTZ...2622 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the depth of coverag...
2622 days ago
- ...OLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end reads...
2616 days ago
Pacbio Long Reads Compatible Software and Tools
...ow of any other open source software for PacBio data? Email us. Software categories: De novo assembly Structural Variations Detection Reference-based alignment Consensus an...2608 days ago
- ...nt data. SNP reports (acceptable in a variety of formats) much each correspond to a single population, with variants called relative to a single reference sequence (one sequence in one...
2593 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...t uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is...be small, and the PacBio read set, which is then corrected using the reference set. Typically, the reference...2582 days ago
- ...which region in the genome each sequences comes from, which gene it represents...To know that you have to align the sequences to the reference sequence. The reference sequence is in most cases the...
2560 days ago
CLA: Contig-Layout-Authenticator
...construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paire...2557 days ago
