Results for "SAM tool"
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MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More at http://www.nature.com/articles/srep241752630 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and sca...2627 days ago
- Samtools is a suite of programs for interacting with high-throughput...s of three separate repositories: SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/writing BCF2/VCF/gVCF...g high-throughput sequencing data Samtools and BCFtools both use HTSlib...
2618 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visual...m plots, or be imported from third-party binning tools and overlaid onto plots, suc...ifferent methods can be compared side-by-side. gbtools reports summary statistics o...2607 days ago
- This website and accompaning documents are intended as a tool to help researchers dealing with non-model o...nsive bioinformatics skills. It covers all steps from tissue collection, sample preparation and computer se...
2600 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Op...
2592 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs usin...tigs and combine them into scaffolds. Currently we offer this as a command-line tool in Perl. The input data is gi...
2567 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the con...ing and scaffolding of large repetitive contigs. The tool has been validated and compar...ably with other widely-used scaffolding and ordering tools using both simulated and rea...2567 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...e gaps left open by the assembler in a draft genome, even when using the same data sets as used by the ori...n Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a tool to transfer the annotation fr...2560 days ago
- A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
2554 days ago
