Loop over with all files in a directory in bash
..."Processing $f file..." ff=$(basename "${f%.*}") echo $ff # take action on each file. $f store current file name mkdir $ff $path/SatsumaSynteny -q $ref -t $f -o $ff #cat...2343 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here my...2152 days ago
GLIBC_2.14 error with SatsumaSynteny !!
I run SatsumaSynteny on my server using following command: [jit@hm satsuma-code-0]$ ./SatsumaSynteny -q Genome/renamedG.fa -t Genome/genome_v4.fasta -o Genome/OutFile -m 128 -ni 10 -n 256 -chain_only But it kill the program with followng error: ./SatsumaSynteny: /lib64/libc.so.6: version...Tags: Satsuma, Synteny, SatsumaSynteny, BLIBC, Redhat, Linux, Server, Comparative Genomics, Alignment
2962 days ago