...contigs (instead of providing .sam files).
The arguments accepted by ScaffMatch are:
-w) Working directory -- this is the directory where ScaffMatch files are stored. These are ....
caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from NGS data (reads and contigs). The tool is written in Python 2.7. It also includes a bash script wrapper that calls aligner in case one needs to first map reads to contigs (instead of...