Results for "Single Cell"
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The eFORGE tool provides a method to view the tissue speci...ed background DMPs. It assesses enrichment on a per cell type basis, since functional elements are differentially active in different cell types, and hence can expose t...2756 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing re...using user own read error model or quality profiles. ART supports simulation of sing...
2750 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions...rmation, please see our wiki. HybPiper is run separately for each sample (sing...
2749 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a sing...
2728 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input opti...coordinates of the input reads and generates alignments in the SAM format given sing...
2722 days ago
- fqtools is a software suite for fast processing of FASTQ files. Various f...st of the individual subcommands will take either a single file or a pair of files as in...For subcommands that generate FASTQ data, either a sing...
2715 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encomp...step as well as new complementary tools tailored for ancient DNA data within a sing...
2712 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archae...hen the organism is unknown. Ease of Use: Prodigal can be run in one step on a sing...2694 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequ...
2627 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...sp;you can Generate a cell x gene or cell x transcript equivalence class&...rix Perform RNA velocity and single-nuclei RNA-seq analsis Quant...-seq. Obtain QC reports from single-cell RNA-seq data The kall...d efficient pre-processing of single-cell RNA-seq, Nature Biotechnology...1136 days ago
