Ten recommendations for creating usable bioinformatics command line software
...e a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I p...rove the uptake and usability of their products, waste less user’s time, and improve the quality of s...3611 days ago
2943 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...it will automatically detect ambiguous mappings. Satsuma has parallelization built-in and is designed to run on multi-core architectures. The run-time for aligning two bird-size ge...2907 days ago
2867 days ago
CGView - Circular Genome Viewer
...phical user interface for customizing genome maps. Styling attributes such as colours or fonts for the various map elements can be adjusted in real time. Customized styles can be sav...2777 days ago
2766 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ve traits is possible, modelling shifts of environmental conditions over time. The dispersal matrix de...e connected sub-populations. This offers a substantial gain in computing time and system memory when simula...2765 days ago
2746 days ago
Bookmarks Biostatistics materials and books
...be obvious from the outside. It has been ten years since the first edition of this book appeared (and rather longer since it was begun). Over this time, new areas of biostatistics h...2727 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...nment of mate pair read pairs to a reference genome is a challenging and time consuming process for most NG...ping and alignment complexity. We describe an algorithm that is up to 20 times faster and 25% more accurate...2691 days ago