Tags: Bioinformatics, Analysis, Visualization, R, Statistics, Learn, Machine Learning
2862 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software
2858 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics
2856 days ago
Tags: Bioinformatics, Analysis, NGS, vcfR, R, Visualization, VCF, Genome
2813 days ago
Tags: Bioinformatics, Analysis, NGS, Visualization, Genome, Rearrangement, Ribbon
2750 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees...Tags: Bioinformatics, Tree, Phylogeny, Visualization, iTOL
2648 days ago
Tags: Bioinformatics, NGS, Reads, Krona, Visualization, View, Plot, Graph
2598 days ago
I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_recTags: I-PV, Interactive, Protein, Sequence, Visualization
2495 days ago
Tags: Circular, Visualization, R
2493 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single comm...Tags: ETE3, Reconstruction, Analysis, Visualization, Phylogenomic, Data
2264 days ago