Results for "Whole genome"
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Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny bloc...hared by pigs and cattle) were detected using the pig and human genomes as a reference, respectively...2747 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms...duplicated genes in the yeast genome. The remaining ambiguities in...used this test to revisit the genome of S. cerevisiae, reducing th...motif discovery. Based on the genome-wide conservation patterns of...2747 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input ...ns scaffolded homozygous genome assembly, that should be ...the gaps resulting from genome assembly or scaffolding ...ptop for small-to-medium size genomes flexible toward many s...
2816 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) i...iate contigs/scaffolds assembled in a genome assembly project, in a proces...t are important for scaffolding large genomes (multi-library support, bett...s and algorithms is available at Genome Biology. We look forward to g...2808 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a...
2808 days ago
- These tutorials are written for hundreds of bioinformatic...in the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive endeavor. To get a genome of interest sequenced, hundre...
2812 days ago
- The Sybil software package provides a prima...ly web-based front-end to comparative genome datasets warehoused in a chad...nstitute (JCVI) and the Institute for Genome Sciences (IGS) at the Univers...rch projects that involve comparative genome analysis. The following secti...
2810 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized thi...tempt to produce a realistic assessment of genome assembly software in a rapidl...AGE have now been published in the journal Genome Research: GAGE: A critic...2810 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e or for application to other genome maps using GView's custom fil...2798 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) ap...ircular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes; customized graphs and annot...2787 days ago
