Results for "bam"
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...<> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF,...2793 days ago
OPERA : Optimal Paired-End Read Assembler
...nt for scaffolding large genomes (multi-library support, better repeat-handling etc.), in addition to other scalability and usability improvements (bam and gzip support, smaller mem...2789 days ago
- ...issues, testing of aligners and variant-callers, and rapid curation of structural variant candidates (Supplementary Note 3). In addition to SAM and BAM files with long, short, or pa...
2747 days ago
- ...t, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While eac...
2621 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the referenc...*.dict), it also creates some empty BAM files if no sam record was fo...ds can also be added to those empty BAMs to avoid some tools (like sa...pped -e | --empty : generate EMPTY bams for chromosome having no rea...2617 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can...2610 days ago
- ...interacting with high-throughput sequencing data. It consists of three separate repositories: SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/wr...
2602 days ago
- ...nbsp;flat files, GFF, FASTA Accepts a number of other commonly-used datatypes and file formats: BSR and TRF output, SAM/BAM files, VCF-encoded...
2500 days ago
Biological file format tutorial
...sh the difference between different formats. Please refer user manual or other information resources on web for more details. FASTA FASTQ SAM BAM VCF GFF GTF...2325 days ago
Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alf...2288 days ago
